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MolNFT v1 · #104949 · protein

Cw-type zinc finger of MORC3 in complex with the amino terminus of histone H3

4QQ4 · Morc family cw-type zinc finger protein 3: “Cw-type zinc finger of MORC3 in complex with the amino terminus of histone H3”. X-ray diffraction, 3 ligands (ZN, UNX, CL). MolNFT v1 #104949 on GenesisL1: 3D structure, binding sites and…

PDB
4QQ4
Type
protein
Length
112 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Morc family cw-type zinc finger protein 3; Histone H3.3
UniProt
Q14149, P84243
Ligands
ZN, UNX, CL

Structure

x-ray diffraction · 2 distinct chains · 11% helix, 23% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BMorc family cw-type zinc finger protein 3protein4813% helix, 19% strandQ14149
C, DHistone H3.3protein80% helix, 50% strandP84243

Ligands and binding sites

  • ZN · Zinc ion · metal · 3 copies · chains A, B
  • UNX · Unknown atom or ion · ion · 7 copies · chains A, B, C, D
  • CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

  • A–C · 636 Ų buried · 16 hydrogen bonds · protein-protein
  • B–D · 607 Ų buried · 14 hydrogen bonds · protein-protein
  • A–B · 365 Ų buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (methylation).

Compared structures

  • 4QQ4 · CW-type zinc finger of MORC3 in complex with the amino terminus of histone H3 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q14149 · AlphaFold monomer V2.0 prediction for morc family cw-type zinc finger protein 3 (Q14149) · a predicted model of the same protein · chain A against A, TM-score 0.92
  • P84243 · AlphaFold monomer V2.0 prediction for histone H3.3 (P84243) · a predicted model of the same protein · chain C against A, TM-score 0.39

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