AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit RPA43 (P46669)

Structure

1 distinct chain · 13% helix, 28% strand (DSSP).

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Compared structures

• 4C3I · Structure of 14-subunit RNA polymerase I at 3.0 a resolution, crystal form C2-100 · an experimental structure of the same protein · chain A against G, TM-score 0.60
• 4C3I · Structure of 14-subunit RNA polymerase I at 3.0 A resolution, crystal form C2-100 · an experimental structure of the same protein · chain A against G, TM-score 0.60
• 4C3J · Structure of 14-subunit RNA polymerase I at 3.35 A resolution, crystal form C2-90 · an experimental structure of the same protein · chain A against G, TM-score 0.59
• 4C3J · Structure of 14-subunit RNA polymerase I at 3.35 a resolution, crystal form C2-90 · an experimental structure of the same protein · chain A against G, TM-score 0.59
• 4C3H · Structure of 14-subunit RNA polymerase I at 3.27 a resolution, crystal form C2-93 · an experimental structure of the same protein · chain A against G, TM-score 0.59
• 4C3H · Structure of 14-subunit RNA polymerase I at 3.27 A resolution, crystal form C2-93 · an experimental structure of the same protein · chain A against G, TM-score 0.59
• 5M5W · RNA polymerase I open complex · an experimental structure of the same protein · chain A against G, TM-score 0.58
• 4C2M · Structure of RNA polymerase I at 2.8 A resolution · an experimental structure of the same protein · chain A against V, TM-score 0.58
• 4C2M · Structure of RNA polymerase I at 2.8 a resolution · an experimental structure of the same protein · chain A against V, TM-score 0.58
• 6RRD · RNA polymerase I pre-initiation complex DNA opening intermediate 1 · an experimental structure of the same protein · chain A against G, TM-score 0.57
• 6RUI · RNA polymerase I pre-initiation complex DNA opening intermediate 2 · an experimental structure of the same protein · chain A against G, TM-score 0.57
• 5OA1 · RNA polymerase I pre-initiation complex · an experimental structure of the same protein · chain A against G, TM-score 0.57

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P46669
• Elsewhere: UniProt P46669 · AlphaFold DB P46669