Research workbench
Crystal structure of human class mu glutathione transferase GSTM2-2: effects of lattice packing on conformational heterogeneity
Analyse Crystal structure of human class mu glutathione transferase GSTM2-2: effects of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HNC
- Type
- protein
- Length
- 868 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione S-transferase
- EC
- 2.5.1.18
- UniProt
- P28161
- Ligands
- GDN
- Pockets
- 10 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Glutathione S-transferase (EC 2.5.1.18) | protein | 217 | 52% helix, 11% strand | P28161 |
Ligands and binding sites
- GDN · Glutathione S-(2,4 dinitrobenzene) · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 949 | 0.79 | 0.81 | 90 | GDN |
| 2 | 1137 | 0.74 | 0.77 | 89 | GDN |
| 3 | 417 | 0.60 | 0.76 | 42 | empty |
| 4 | 136 | 0.52 | 0.80 | 21 | empty |
| 5 | 69 | 0.47 | 0.83 | 16 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1418 Ų buried · 14 hydrogen bonds · protein-protein
- C–D · 1397 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 172 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 1HNC · Crystal structure of human class mu glutathione transferase GSTM2-2: effects of lattice… · the same entry in another collection · chain A against A, TM-score 1.00
- P28161 · AlphaFold monomer V2.0 prediction for glutathione S-transferase mu 2 (P28161) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28161
- Elsewhere: RCSB PDB 1HNC · PDBe 1HNC · UniProt P28161
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.