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Ligand · GDN

GDN · Glutathione S-(2,4 dinitrobenzene)

GDN, Glutathione S-(2,4 dinitrobenzene) (C16 H19 N5 O10 S, 473.4 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
GDN
Formula
C16 H19 N5 O10 S
Class
ligand
Structures
3
PDB entries
2

Binding sites

GDN in 3 structures; the first of them:

  • 5GST · Reaction coordinate motion in an snar reaction catalyzed by glutathione transferase · GDN A219 · binds TYR6, TRP7, LEU12, ARG42, TRP45, LYS49, ASN58, LEU59 and 6 more
  • 6F4F · Crystal structure of glutathione transferase Omega 3S from Trametes versicolor in complex… · GDN A301 · binds PHE14, SER15, TYR17, ARG20, ILE39, LEU40, LYS54, LYS55 and 10 more
  • 6F4F · Crystal structure of glutathione transferase omega 3S from trametes versicolor in complex… · GDN A301 · binds PHE14, TYR17, ILE39, LEU40, LYS54, LYS55, ILE56, PRO57 and 8 more

Residues it binds most

TYR 6, LYS 6, ILE 5, LEU 6, ARG 6, PHE 4, SER 6, ASN 6, MET 6, PRO 6 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • GOL · Glycerol
  • PEG · Di(hydroxyethyl)ether
  • SO4 · Sulfate ion

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