Spore photoproduct lyase complexed with dinucleoside spore photoproduct

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).

Ligands and binding sites

• SF4 · Iron/sulfur cluster · ligand · chains A
• EEM · [(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium · ligand · chains A
• 0TT · 1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione · ligand · chains A
• POP · Pyrophosphate 2- · ligand · chains A
• SO4 · Sulfate ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Compared structures

• 4FHD · Spore photoproduct lyase complexed with dinucleoside spore photoproduct · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt A4IQU1
• Elsewhere: RCSB PDB 4FHD · PDBe 4FHD · UniProt A4IQU1