Research workbench
Crystal structure of the prealnumycin C-glycosynthase alna in complex with ribulose 5-phosphate
Analyse Crystal structure of the prealnumycin C-glycosynthase alna in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EX9
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alna
- UniProt
- B6SEG5
- Ligands
- 5RP, CA, CL
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alna | protein | 302 | 50% helix, 21% strand | B6SEG5 |
Ligands and binding sites
- 5RP · Ribulose-5-phosphate · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 583 | 0.68 | 0.77 | 49 | 5RP, CL |
| 2 | 75 | 0.49 | 0.83 | 15 | empty |
| 3 | 103 | 0.48 | 0.80 | 23 | empty |
| 4 | 53 | 0.44 | 0.84 | 15 | empty |
| 5 | 76 | 0.42 | 0.80 | 20 | empty |
Compared structures
- 4EX9 · Crystal structure of the prealnumycin C-glycosynthase AlnA in complex with ribulose… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6SEG5
- Elsewhere: RCSB PDB 4EX9 · PDBe 4EX9 · UniProt B6SEG5
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