Research workbench
Structure of human regulator of G protein signaling 2 (RGS2) in complex with murine galpha-Q(R183C)
Analyse Structure of human regulator of G protein signaling 2 (RGS2) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EKD
- Type
- protein
- Length
- 450 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanine nucleotide-binding protein G(Q) subunit alpha; Regulator of G-protein signaling 2
- EC
- 3.6.5.1
- UniProt
- P21279, P41220
- Ligands
- GDP, ALF, CO, MG, CL
- Pockets
- 3 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 56% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanine nucleotide-binding protein G(Q) subunit alpha (EC 3.6.5.1) | protein | 318 | 50% helix, 13% strand | P21279 |
| B | Regulator of G-protein signaling 2 | protein | 132 | 69% helix, 0% strand | P41220 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
- ALF · Tetrafluoroaluminate ion · ligand · chains A
- CO · Cobalt (II) ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1080 | 0.84 | 0.85 | 102 | GDP, ALF, MG |
| 2 | 51 | 0.43 | 0.84 | 17 | empty |
| 3 | 83 | 0.36 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1113 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 4EKD · Structure of human regulator of G protein signaling 2 (RGS2) in complex with murine… · the same entry in another collection · chain A against A, TM-score 1.00
- P21279 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(Q) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.98
- P41220 · AlphaFold monomer V2.0 prediction for regulator of G-protein signaling 2 (P41220) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21279
- Every structure of UniProt P41220
- Elsewhere: RCSB PDB 4EKD · PDBe 4EKD · UniProt P21279 · UniProt P41220
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