Research workbench
Crystal structure of saposin a in complex with lauryldimethylamine-N- oxide (ldao)
Analyse Crystal structure of saposin a in complex with lauryldimethylamine-N- oxide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4DDJ
- Type
- protein
- Length
- 80 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Saposin-a
- UniProt
- P07602
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Saposin-a | protein | 80 | 79% helix, 0% strand | P07602 |
Ligands and binding sites
- LDA · Lauryl dimethylamine-N-oxide · additive · 20 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 4DDJ · Crystal structure of saposin A in complex with lauryldimethylamine-N-oxide (LDAO) · the same entry in another collection · chain A against A, TM-score 1.00
- P07602 · AlphaFold monomer V2.0 prediction for prosaposin (P07602) · a predicted model of the same protein · chain A against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07602
- Elsewhere: RCSB PDB 4DDJ · PDBe 4DDJ · UniProt P07602
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