Research workbench

Mbl-ficolin associated protein-1, MAP-1 aka MAP44

Analyse Mbl-ficolin associated protein-1, MAP-1 aka MAP44 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4AQB
Type: protein
Length: 345 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mannan-binding lectin serine protease 1
UniProt: P48740
Ligands: NAG, MAN, BMA, CA

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mannan-binding lectin serine protease 1	protein	345	3% helix, 45% strand	P48740

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A
BMA · beta-D-mannopyranose · sugar · 2 copies
CA · Calcium ion · metal · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 8 disulfide, 2 glycan (disulfide, N-glycosylation).

Compared structures

4AQB · MBL-Ficolin Associated Protein-1, MAP-1 aka MAP44 · the same entry in another collection · chain A against A, TM-score 1.00
P48740 · AlphaFold monomer V2.0 prediction for mannan-binding lectin serine protease 1 (P48740) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48740
Elsewhere: RCSB PDB 4AQB · PDBe 4AQB · UniProt P48740

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