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Crystal structure of escherichia COLI bamd

Analyse Crystal structure of escherichia COLI bamd in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3Q5M
Type: protein
Length: 210 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0169 lipoprotein yfio
UniProt: P0AC02
Ligands: IOD
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0169 lipoprotein yfio	protein	210	75% helix, 0% strand	P0AC02

Ligands and binding sites

IOD · Iodide ion · ion · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.36	0.79	19	IOD

Compared structures

3Q5M · Crystal structure of Escherichia coli BamD · the same entry in another collection · chain A against A, TM-score 1.00
P0AC02 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bamd (P0AC02) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AC02
Elsewhere: RCSB PDB 3Q5M · PDBe 3Q5M · UniProt P0AC02

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