UniProt P0AC02
Outer membrane protein assembly factor BamD (P0AC02)
Outer membrane protein assembly factor BamD (UniProt P0AC02): 48 experimental structures and 1 predicted model on GenesisL1, 126 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0AC02
- Protein
- Outer membrane protein assembly factor BamD
- Experimental structures
- 48
- Predicted models
- 1
- Pockets
- 126 · 22 records with a druggable one
Structures
49 records of P0AC02 in the MolNFT archive: 48 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2YHC | Structure of BamD from E. coli | x-ray diffraction | A | — | — |
| 2YHC | Structure of bamd from E. COLI | x-ray diffraction | A | — | — |
| 3Q5M | Crystal structure of Escherichia coli BamD | x-ray diffraction | A | — | — |
| 3Q5M | Crystal structure of escherichia COLI bamd | x-ray diffraction | A | — | — |
| 3TGO | Crystal structure of the E. coli BamCD complex | x-ray diffraction | A, B | — | — |
| 3TGO | Crystal structure of the E. COLI bamcd complex | x-ray diffraction | A, B | — | — |
| 5AYW | Structure of a membrane complex | x-ray diffraction | D | — | — |
| 5AYW | Structure of a membrane complex | x-ray diffraction | D | — | — |
| 5D0O | BamABCDE complex, outer membrane beta barrel assembly machinery entire complex | x-ray diffraction | D | — | 9 (best 0.63) |
| 5D0O | Bamabcde complex, outer membrane beta barrel assembly machinery entire complex | x-ray diffraction | D | — | — |
| 5D0Q | Bamacde complex, outer membrane beta-barrel assembly machinery (bam) complex | x-ray diffraction | D, H | — | — |
| 5EKQ | The structure of the BamACDE subcomplex from E. coli | x-ray diffraction | D | — | — |
| 5EKQ | The structure of the bamacde subcomplex from E. COLI | x-ray diffraction | D | — | — |
| 6LYQ | Structure of the BAM complex | x-ray diffraction | D | — | — |
| 6LYQ | Structure of the bam complex | x-ray diffraction | D | — | — |
| 6LYR | Structure of the BAM complex | x-ray diffraction | D | — | — |
| 6LYR | Structure of the bam complex | x-ray diffraction | D | — | — |
| 6LYS | Structure of the BAM complex | x-ray diffraction | D | — | — |
| 6LYS | Structure of the bam complex | x-ray diffraction | D | — | — |
| 6LYU | Structure of the BAM complex | electron microscopy | D | — | — |
| 6LYU | Structure of the bam complex | electron microscopy | D | — | — |
| 7BNQ | Lateral-closed conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM | electron microscopy | D | — | 6 (best 0.60) |
| 7BNQ | Lateral-closed conformation of the lid-locked bam complex (bama E435C S665C, bambdce) by cryoem | electron microscopy | D | — | — |
| 7NBX | Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM | electron microscopy | D | — | 5 (best 0.85) |
| 7NBX | Lateral-open conformation of the lid-locked bam complex (bama E435C S665C, bambdce) by cryoem | electron microscopy | D | — | — |
| 7NCS | Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) bound by a… | electron microscopy | D | — | 4 (best 0.87) |
| 7NCS | Lateral-open conformation of the lid-locked bam complex (bama E435C S665C, bambdce) bound by a… | electron microscopy | D | — | — |
| 7ND0 | lateral-open conformation of the wild-type BAM complex (BamABCDE) bound to a bactericidal Fab… | electron microscopy | D | — | 3 (best 0.82) |
| 7ND0 | Lateral-open conformation of the wild-type bam complex (bamabcde) bound to a bactericidal Fab… | electron microscopy | D | — | — |
| 7NRI | Structure of the darobactin-bound E. coli BAM complex (BamABCDE) | electron microscopy | D | — | 7 (best 0.64) |
| 7NRI | Structure of the darobactin-bound E. COLI bam complex (bamabcde) | electron microscopy | D | — | — |
| 7R1W | E. coli BAM complex (BamABCDE) bound to dynobactin A | electron microscopy | D | — | 7 (best 0.61) |
| 7YE4 | BAM-EspP complex structure with BamA-G431C and G781C/EspP-N1293C and A1043C mutations in nanodisc | electron microscopy | D | — | 5 (best 0.76) |
| 7YE6 | BAM-EspP complex structure with BamA-N427C/EspP-R1297C mutations in nanodisc | electron microscopy | D | — | 6 (best 0.75) |
| 8ADG | Cryo-EM structure of Darobactin 22 bound BAM complex | electron microscopy | D | — | 6 (best 0.66) |
| 8ADI | Cryo-EM structure of Darobactin 9 bound BAM complex | electron microscopy | D | — | 6 (best 0.60) |
| 8BNZ | BAM-EspP complex structure with BamA-G431C/EspP-N1293C mutations in nanodisc | electron microscopy | D | — | 4 (best 0.53) |
| 8BO2 | BAM-EspP complex structure with BamA-S425C/EspP-S1299C mutations in nanodisc | electron microscopy | D | — | — |
| 8BVQ | E. coli BAM complex (BamABCDE) bound to darobactin B | electron microscopy | D | — | 5 (best 0.69) |
| 8PZ1 | Wait Complex: Lateral open BAM bound Compact SurA | electron microscopy | D | — | 6 (best 0.66) |
| 8PZ2 | Wait Complex: Lateral open BAM bound Extended SurA | electron microscopy | D | — | 6 (best 0.58) |
| 8PZV | Wait Complex: BAM bound Darobactin-B and Extended SurA | electron microscopy | D | — | 6 (best 0.59) |
| 8Q0G | Release Complex: BAM bound EspP and Compact SurA | electron microscopy | D | — | 6 (best 0.77) |
| 8QN4 | Structure of BAM-EspP complex in the non-closing EspP state | electron microscopy | D | — | 5 (best 0.65) |
| 8QP5 | Release Complex: BAM bound EspP (SurA released) | electron microscopy | D | — | 6 (best 0.76) |
| 8QPU | Release Complex: BAM bound EspP and Extended SurA | electron microscopy | D | — | 3 (best 0.74) |
| 8QPV | Handover Complex: BAM bound OmpX and extended SurA | electron microscopy | D | — | 8 (best 0.81) |
| 8QPW | Arrival Complex: Lateral open BAM bound extended SurA plus OmpX | electron microscopy | D | — | 7 (best 0.77) |
| P0AC02 | AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bamd (P0AC02) | predicted | A | — | — |
Experiment against prediction
- 8PZ1 chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.09 Å
- 8PZ2 chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.11 Å
- 8QP5 chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.15 Å
- 5D0Q chain H against the predicted model P0AC02: TM-score 0.96, RMSD 1.18 Å
- 8Q0G chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.18 Å
- 8QPV chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.20 Å
- 5EKQ chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.26 Å
- 5EKQ chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.26 Å
- 5D0Q chain D against the predicted model P0AC02: TM-score 0.96, RMSD 1.25 Å
- 3TGO chain B against the predicted model P0AC02: TM-score 0.95, RMSD 1.60 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.