Research workbench
Crystal structure of the soybean agglutinin in a complex with a biantennary blood group antigen analog
Analyse Crystal structure of the soybean agglutinin in a complex with a biantennary… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1G9F
- Type
- protein
- Length
- 241 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin
- UniProt
- P05046
- Ligands
- NAG, GAL, MN, CA
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lectin | protein | 241 | 5% helix, 45% strand | P05046 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- GAL · beta-D-galactopyranose · sugar · 3 copies · chains A
- MN · Manganese (II) ion · metal · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 glycan (N-glycosylation).
Compared structures
- 1G9F · Crystal structure of the soybean agglutinin in a complex with a biantennary blood group… · the same entry in another collection · chain A against A, TM-score 1.00
- P05046 · AlphaFold monomer V2.0 prediction for lectin (P05046) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05046
- Elsewhere: RCSB PDB 1G9F · PDBe 1G9F · UniProt P05046
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