Research workbench
Yeast V-ATPase state 1
Analyse Yeast V-ATPase state 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3J9T
- Type
- protein
- Length
- 7,451 residues
- Chains
- 28
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P32610, P39111, P17255, P16140, P32366, P48836, P22203, P41807, P32563, P31412, P25515
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| M | — | protein | 210 | — | P32610 |
| N | — | protein | 115 | — | P39111 |
| A, C, E | — | protein | 593 | — | P17255 |
| B, D, F | — | protein | 457 | — | P16140 |
| Q | — | protein | 345 | — | P32366 |
| L, H, J | — | protein | 105 | — | P48836 |
| K, G, I | — | protein | 217 | — | P22203 |
| P | — | protein | 461 | — | P41807 |
| b | — | protein | 312 | — | P32563 |
| O | — | protein | 392 | — | P31412 |
| Y, R, U, V, T, W, S, X, Z, a | — | protein | 150 | — | P25515 |
Compared structures
- P17255 · AlphaFold monomer V2.0 prediction for V-type proton ATPase catalytic subunit a (P17255) · a predicted model of the same protein · chain A against A, TM-score 0.94
- P16140 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit B (P16140) · a predicted model of the same protein · chain B against A, TM-score 0.93
- P25515 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit C (P25515) · a predicted model of the same protein · chain Y against A, TM-score 0.92
- P39111 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit F (P39111) · a predicted model of the same protein · chain N against A, TM-score 0.91
- P32610 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit D (P32610) · a predicted model of the same protein · chain M against A, TM-score 0.90
- P41807 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit H (P41807) · a predicted model of the same protein · chain P against A, TM-score 0.85
- P31412 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit C (P31412) · a predicted model of the same protein · chain O against A, TM-score 0.84
- P22203 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit E (P22203) · a predicted model of the same protein · chain K against A, TM-score 0.83
- P32366 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit D (P32366) · a predicted model of the same protein · chain Q against A, TM-score 0.81
- P32563 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit a, vacuolar isoform… · a predicted model of the same protein · chain b against A, TM-score 0.68
- P48836 · AlphaFold monomer V2.0 prediction for V-type proton ATPase subunit G (P48836) · a predicted model of the same protein · chain L against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32610
- Every structure of UniProt P39111
- Every structure of UniProt P17255
- Every structure of UniProt P16140
- Every structure of UniProt P32366
- Every structure of UniProt P48836
- Every structure of UniProt P22203
- Every structure of UniProt P41807
- Every structure of UniProt P32563
- Every structure of UniProt P31412
- Every structure of UniProt P25515
- Elsewhere: RCSB PDB 3J9T · PDBe 3J9T · UniProt P32610 · UniProt P39111 · UniProt P17255 · UniProt P16140 · UniProt P32366 · UniProt P48836 · UniProt P22203 · UniProt P41807 · UniProt P32563 · UniProt P31412 · UniProt P25515
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