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Sant domain of human DNA methyltransferase 1 associated protein 1

Analyse Sant domain of human DNA methyltransferase 1 associated protein 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3HM5
Type
protein
Length
74 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA methyltransferase 1-associated protein 1
UniProt
Q9NPF5
Ligands
CA, UNX

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA methyltransferase 1-associated protein 1protein7462% helix, 3% strandQ9NPF5

Ligands and binding sites

  • CA · Calcium ion · metal · chains A
  • UNX · Unknown atom or ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 3HM5 · SANT domain of human DNA methyltransferase 1 associated protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9NPF5 · AlphaFold monomer V2.0 prediction for DNA methyltransferase 1-associated protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

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