Research workbench
NMR structure of a concatemer of the first and second ligand-binding modules of the human LDL receptor
Analyse NMR structure of a concatemer of the first and second ligand-binding modules of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1F5Y
- Type
- protein
- Length
- 85 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Low-density lipoprotein receptor
- UniProt
- P01130
- Ligands
- CA
Structure
solution nmr · 1 distinct chain · 7% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Low-density lipoprotein receptor | protein | 85 | 7% helix, 9% strand | P01130 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 1F5Y · NMR structure of a concatemer of the first and second ligand-binding modules of the human… · the same entry in another collection · chain A against A, TM-score 1.00
- P01130 · AlphaFold monomer V2.0 prediction for low-density lipoprotein receptor (P01130) · a predicted model of the same protein · chain A against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01130
- Elsewhere: RCSB PDB 1F5Y · PDBe 1F5Y · UniProt P01130
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