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WEE1 kinase complex with inhibitor PD331618

Analyse WEE1 kinase complex with inhibitor PD331618 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3BIZ
Type
protein
Length
250 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
WEE1-like protein kinase
EC
2.7.10.2
UniProt
P30291
Ligands
61E, CL
Pockets
2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AWEE1-like protein kinase (EC 2.7.10.2)protein25040% helix, 19% strandP30291

Ligands and binding sites

  • 61E · 4-(2-chlorophenyl)-8-[3-(dimethylamino)propoxy]-9-hydroxy-6-methylpyrrolo[3,4-c]carbazole-1,3(2H,6H)-dione · ligand · chains A
  • CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11880.570.802461E
2760.400.7816CL

Compared structures

  • 3BIZ · Wee1 kinase complex with inhibitor PD331618 · the same entry in another collection · chain A against A, TM-score 1.00
  • P30291 · AlphaFold monomer V2.0 prediction for WEE1-like protein kinase (P30291) · a predicted model of the same protein · chain A against A, TM-score 0.98

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