Research workbench

Crystal structure of a biotin protein ligase-like protein of unknown function (TM1040_0394) from silicibacter sp. TM1040 at 1.70 a resolution

Analyse Crystal structure of a biotin protein ligase-like protein of unknown function… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3BFM
Type: protein
Length: 230 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Biotin protein ligase-like protein of unknown function
UniProt: Q1GJN9
Ligands: CA
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Biotin protein ligase-like protein of unknown function	protein	230	30% helix, 28% strand	Q1GJN9

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
2PE · Nonaethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.37	0.75	19	empty
2	80	0.33	0.75	19	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

3BFM · Crystal structure of a biotin protein ligase-like protein of unknown function… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1GJN9
Elsewhere: RCSB PDB 3BFM · PDBe 3BFM · UniProt Q1GJN9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.