Research workbench
CBM62 from clostridium thermocellum XYL5A
Analyse CBM62 from clostridium thermocellum XYL5A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YG0
- Type
- protein
- Length
- 139 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbohydrate binding family 6
- UniProt
- D1NNT8
- Ligands
- BMA, GLA, CA
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbohydrate binding family 6 | protein | 139 | 9% helix, 36% strand | D1NNT8 |
Ligands and binding sites
- BMA · beta-D-mannopyranose · sugar · chains A
- GLA · alpha-D-galactopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2YG0 · CBM62 from clostridium thermocellum XYL5A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1NNT8
- Elsewhere: RCSB PDB 2YG0 · PDBe 2YG0 · UniProt D1NNT8
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