Research workbench
Single particle analysis of psd-95 in negative stain
Analyse Single particle analysis of psd-95 in negative stain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XKX
- Type
- protein
- Length
- 1,439 residues
- Chains
- 2
- Method
- electron microscopy; solution scattering
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Disks large homolog 4
- UniProt
- P31016
- Pockets
- 9 · best druggability 0.81
Structure
electron microscopy; solution scattering · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Disks large homolog 4 | protein | 721 | 0% helix, 0% strand | P31016 |
| B | Disks large homolog 4 | protein | 718 | 0% helix, 0% strand | P31016 |
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 981 | 0.81 | 0.80 | 209 | empty |
| 2 | 637 | 0.74 | 0.79 | 150 | empty |
| 3 | 419 | 0.68 | 0.78 | 99 | empty |
| 4 | 616 | 0.67 | 0.75 | 120 | empty |
| 5 | 316 | 0.64 | 0.78 | 87 | empty |
Interfaces
1 interface between chains.
- A–B · 12679 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31016
- Elsewhere: RCSB PDB 2XKX · PDBe 2XKX · UniProt P31016
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