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Structure of mouse A1 bound to the bak BH3-domain

Analyse Structure of mouse A1 bound to the bak BH3-domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2VOH
Type
protein
Length
179 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
BCL-2-related protein A1; BCL-2 homologous ANTAGONIST/KILLER
UniProt
Q07440, O08734
Ligands
SO4

Structure

x-ray diffraction · 2 distinct chains · 77% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABCL-2-related protein A1protein15576% helix, 0% strandQ07440
BBCL-2 homologous ANTAGONIST/KILLERprotein2479% helix, 0% strandO08734

Ligands and binding sites

  • SO4 · Sulfate ion · ion · chains A, B
  • CIT · Citric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 1000 Ų buried · 11 hydrogen bonds · protein-protein

Compared structures

  • 2VOH · Structure of mouse A1 bound to the Bak BH3-domain · the same entry in another collection · chain A against A, TM-score 1.00
  • Q07440 · AlphaFold monomer V2.0 prediction for BCL-2-related protein A1 (Q07440) · a predicted model of the same protein · chain A against A, TM-score 0.90
  • O08734 · AlphaFold monomer V2.0 prediction for BCL-2 homologous ANTAGONIST/KILLER (O08734) · a predicted model of the same protein · chain B against A, TM-score 0.80

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