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Atomic-resolution structure of the yeast SLA1 SH3 domain 3

Analyse Atomic-resolution structure of the yeast SLA1 SH3 domain 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2V1Q
Type: protein
Length: 118 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytoskeleton assembly control protein SLA1
UniProt: P32790
Ligands: PT, NA, CL

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytoskeleton assembly control protein SLA1	protein	60	5% helix, 45% strand	P32790
B	Cytoskeleton assembly control protein SLA1	protein	58	5% helix, 47% strand	P32790

Ligands and binding sites

PT · Platinum (II) ion · metal · 2 copies · chains A, B
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 416 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

2V1Q · Atomic-resolution structure of the yeast Sla1 SH3 domain 3 · the same entry in another collection · chain A against A, TM-score 1.00
P32790 · AlphaFold monomer V2.0 prediction for actin cytoskeleton-regulatory complex protein SLA1… · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32790
Elsewhere: RCSB PDB 2V1Q · PDBe 2V1Q · UniProt P32790

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