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A crystal structure of ppar alpha bound with SRC1 peptide and GW735
Analyse A crystal structure of ppar alpha bound with SRC1 peptide and GW735 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P54
- Type
- protein
- Length
- 279 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxisome proliferator-activated receptor alpha; Nuclear receptor coactivator 1
- EC
- 2.3.1.48
- UniProt
- Q07869, Q15788
- Ligands
- 735
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxisome proliferator-activated receptor alpha | protein | 267 | 67% helix, 5% strand | Q07869 |
| B | Nuclear receptor coactivator 1 (EC 2.3.1.48) | protein | 12 | 67% helix, 0% strand | Q15788 |
Ligands and binding sites
- 735 · 2-methyl-2-(4-{[({4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-thiazol-5-yl}carbonyl)amino]methyl}phenoxy)propanoic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 476 | 0.85 | 0.91 | 53 | 735 |
Interfaces
1 interface between chains.
- A–B · 604 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 2P54 · a crystal structure of PPAR alpha bound with SRC1 peptide and GW735 · the same entry in another collection · chain A against A, TM-score 1.00
- Q07869 · AlphaFold monomer V2.0 prediction for peroxisome proliferator- activated receptor alpha… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q07869
- Every structure of UniProt Q15788
- Elsewhere: RCSB PDB 2P54 · PDBe 2P54 · UniProt Q07869 · UniProt Q15788
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