Research workbench
Structure of APPBP1-UBA3~NEDD8-NEDD8-mgatp-UBC12(C111A), a trapped ubiquitin-like protein activation complex
Analyse Structure of APPBP1-UBA3~NEDD8-NEDD8-mgatp-UBC12(C111A), a trapped… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2NVU
- Type
- protein
- Length
- 1,647 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q13564, Q8TBC4, P61081, Q15843
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 530 | — | Q13564 |
| B | — | protein | 789 | — | Q8TBC4 |
| C | — | protein | 176 | — | P61081 |
| I, J | — | protein | 76 | — | Q15843 |
Compared structures
- 2NVU · Structure of APPBP1-UBA3~NEDD8-NEDD8-MgATP-Ubc12(C111A), a trapped ubiquitin-like protein… · the same entry in another collection · chain J against J, TM-score 1.00
- Q13564 · AlphaFold monomer V2.0 prediction for NEDD8-activating enzyme E1 regulatory subunit… · a predicted model of the same protein · chain A against A, TM-score 0.99
- P61081 · AlphaFold monomer V2.0 prediction for NEDD8-conjugating enzyme UBC12 (P61081) · a predicted model of the same protein · chain C against A, TM-score 0.92
- Q15843 · AlphaFold monomer V2.0 prediction for NEDD8 (Q15843) · a predicted model of the same protein · chain I against A, TM-score 0.90
- Q8TBC4 · AlphaFold monomer V2.0 prediction for NEDD8-activating enzyme E1 catalytic subunit… · a predicted model of the same protein · chain B against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13564
- Every structure of UniProt Q8TBC4
- Every structure of UniProt P61081
- Every structure of UniProt Q15843
- Elsewhere: RCSB PDB 2NVU · PDBe 2NVU · UniProt Q13564 · UniProt Q8TBC4 · UniProt P61081 · UniProt Q15843
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