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NMR structure of thrombomodulin EGF(4-5)

Analyse NMR structure of thrombomodulin EGF(4-5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DQB
Type: protein
Length: 83 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thrombomodulin
UniProt: P07204
Ligands: NAG

Structure

solution nmr · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thrombomodulin	protein	83	0% helix, 0% strand	P07204

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 6 disulfide, 2 glycan (disulfide, N-glycosylation).

Compared structures

1DQB · NMR structure of thrombomodulin EGF(4-5) · the same entry in another collection · chain A against A, TM-score 1.00
P07204 · AlphaFold monomer V2.0 prediction for thrombomodulin (P07204) · a predicted model of the same protein · chain A against A, TM-score 0.46

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07204
Elsewhere: RCSB PDB 1DQB · PDBe 1DQB · UniProt P07204

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