Research workbench
3D NMR structure of the cytoplasmic rhodanese domain of the full- length inner membrane protein ygap from escherichia COLI
Analyse 3D NMR structure of the cytoplasmic rhodanese domain of the full- length inner… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MOL
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inner membrane protein ygap
- UniProt
- P55734
- Pockets
- 2 · best druggability 0.59
Structure
solution nmr · 1 distinct chain · 29% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inner membrane protein ygap | protein | 108 | 29% helix, 16% strand | P55734 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.59 | 0.87 | 25 | empty |
| 2 | 84 | 0.34 | 0.74 | 17 | empty |
Compared structures
- 2MOL · 3D NMR structure of the cytoplasmic rhodanese domain of the full-length inner membrane… · the same entry in another collection · chain A against A, TM-score 1.00
- P55734 · AlphaFold monomer V2.0 prediction for inner membrane protein ygap (P55734) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55734
- Elsewhere: RCSB PDB 2MOL · PDBe 2MOL · UniProt P55734
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