MolNFT v1 · #530318 · protein
AlphaFold monomer V2.0 prediction for inner membrane protein ygap (P55734)
P55734: “AlphaFold monomer V2.0 prediction for inner membrane protein ygap (P55734)”. 1 pocket (best druggability 0.33). MolNFT v1 #530318 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P55734
- Type
- protein
- Length
- 174 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF435Cc7528760B6B8D880Df3befF1C3095f62B98
- Molecule
- Inner membrane protein ygap
- UniProt
- P55734
- Pockets
- 1 · best druggability 0.33
Structure
1 distinct chain · 54% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inner membrane protein ygap | protein | 174 | 54% helix, 14% strand | P55734 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.33 | 0.77 | 13 | empty |
Compared structures
- 5HBL · Native rhodanese domain of ygap prepared with 1MM ddt is S- nitrosylated · an experimental structure of the same protein · chain A against A, TM-score 0.60
- 5HBQ · C63D mutant of the rhodanese domain of YgaP · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HBQ · C63D mutant of the rhodanese domain of ygap · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HBP · The crystal of rhodanese domain of ygap treated with snoc · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HBP · The crystal of rhodanese domain of YgaP treated with SNOC · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HBO · Native rhodanese domain of YgaP prepared without DDT is both S-nitrosylated and… · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HBO · Native rhodanese domain of ygap prepared without ddt is both S- nitrosylated and… · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HPA · The crystal of rhodanese domain of ygap treated with sodium thiosulfate · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5HPA · The crystal of rhodanese domain of YgaP treated with sodium thiosulfate · an experimental structure of the same protein · chain A against A, TM-score 0.59
- 5LAO · S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane… · an experimental structure of the same protein · chain A against A, TM-score 0.58
- 5LAO · S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane… · an experimental structure of the same protein · chain A against A, TM-score 0.58
- 5LAM · Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane… · an experimental structure of the same protein · chain A against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55734
- Elsewhere: UniProt P55734 · AlphaFold DB P55734
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