MolNFT v1 · #120796 · protein

C63D mutant of the rhodanese domain of ygap

5HBQ · Inner membrane protein ygap: “C63D mutant of the rhodanese domain of ygap”. X-ray diffraction, 2 ligands (NA, CL). MolNFT v1 #120796 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HBQ
Type: protein
Length: 103 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Inner membrane protein ygap
UniProt: P55734
Ligands: NA, CL

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Inner membrane protein ygap	protein	103	43% helix, 21% strand	P55734

Ligands and binding sites

NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5HBQ · C63D mutant of the rhodanese domain of YgaP · the same entry in another collection · chain A against A, TM-score 1.00
P55734 · AlphaFold monomer V2.0 prediction for inner membrane protein ygap (P55734) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55734
Elsewhere: RCSB PDB 5HBQ · PDBe 5HBQ · UniProt P55734

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