UniProt P55734
Inner membrane protein YgaP (P55734)
Inner membrane protein YgaP (UniProt P55734): 19 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P55734
- Protein
- Inner membrane protein YgaP
- Experimental structures
- 19
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 1 · 0 records with a druggable one
Structures
20 records of P55734 in the MolNFT archive: 19 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2MOI | 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from… | solution nmr | A | — | — |
| 2MOI | 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein ygap from… | solution nmr | A | — | — |
| 2MOL | 3D NMR structure of the cytoplasmic rhodanese domain of the full-length inner membrane protein YgaP… | solution nmr | A | — | — |
| 2MOL | 3D NMR structure of the cytoplasmic rhodanese domain of the full- length inner membrane protein… | solution nmr | A | — | — |
| 2MPN | 3D NMR structure of the transmembrane domain of the full-length inner membrane protein YgaP from… | solution nmr | A, B | — | — |
| 2MPN | 3D NMR structure of the transmembrane domain of the full-length inner membrane protein ygap from… | solution nmr | A, B | — | — |
| 5HBL | Native rhodanese domain of ygap prepared with 1MM ddt is S- nitrosylated | x-ray diffraction | A | — | — |
| 5HBO | Native rhodanese domain of YgaP prepared without DDT is both S-nitrosylated and S-sulfhydrated | x-ray diffraction | A | — | — |
| 5HBO | Native rhodanese domain of ygap prepared without ddt is both S- nitrosylated and S-sulfhydrated | x-ray diffraction | A | — | — |
| 5HBP | The crystal of rhodanese domain of YgaP treated with SNOC | x-ray diffraction | A | — | — |
| 5HBP | The crystal of rhodanese domain of ygap treated with snoc | x-ray diffraction | A | — | — |
| 5HBQ | C63D mutant of the rhodanese domain of YgaP | x-ray diffraction | A | CL, NA | — |
| 5HBQ | C63D mutant of the rhodanese domain of ygap | x-ray diffraction | A | — | — |
| 5HPA | The crystal of rhodanese domain of YgaP treated with sodium thiosulfate | x-ray diffraction | A | — | — |
| 5HPA | The crystal of rhodanese domain of ygap treated with sodium thiosulfate | x-ray diffraction | A | — | — |
| 5LAM | Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP… | solution nmr | A | — | — |
| 5LAM | Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein ygap… | solution nmr | A | — | — |
| 5LAO | S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein… | solution nmr | A | — | — |
| 5LAO | S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein… | solution nmr | A | — | — |
| P55734 | AlphaFold monomer V2.0 prediction for inner membrane protein ygap (P55734) | predicted | A | — | 1 (best 0.33) |
Ligands
Experiment against prediction
- 5HBQ chain A against the predicted model P55734: TM-score 0.99, RMSD 0.38 Å
- 5HBQ chain A against the predicted model P55734: TM-score 0.99, RMSD 0.38 Å
- 5HBP chain A against the predicted model P55734: TM-score 0.99, RMSD 0.39 Å
- 5HBP chain A against the predicted model P55734: TM-score 0.99, RMSD 0.39 Å
- 5HBO chain A against the predicted model P55734: TM-score 0.99, RMSD 0.40 Å
- 5HBO chain A against the predicted model P55734: TM-score 0.99, RMSD 0.40 Å
- 5HPA chain A against the predicted model P55734: TM-score 0.99, RMSD 0.42 Å
- 5HPA chain A against the predicted model P55734: TM-score 0.99, RMSD 0.42 Å
- 5HBL chain A against the predicted model P55734: TM-score 0.99, RMSD 0.45 Å
- 5LAO chain A against the predicted model P55734: TM-score 0.90, RMSD 1.40 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.