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Structure of CBM32 from clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose

Analyse Structure of CBM32 from clostridium perfringens beta-N- acetylhexosaminidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2J1A
Type
protein
Length
141 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Hyaluronidase
UniProt
Q8XL08
Ligands
GAL, CA

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 52% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AHyaluronidaseprotein1413% helix, 52% strandQ8XL08

Ligands and binding sites

  • GAL · beta-D-galactopyranose · sugar · chains A
  • CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 2J1A · Structure of CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q8XL08 · AlphaFold monomer V2.0 prediction for O-glcnacase nagj (Q8XL08) · a predicted model of the same protein · chain A against A, TM-score 0.96

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