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Crystal structure of dcsign-crd with MAN2

Analyse Crystal structure of dcsign-crd with MAN2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2IT6
Type: protein
Length: 132 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CD209 antigen
UniProt: Q9NNX6
Ligands: MAN, CA

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CD209 antigen	protein	132	20% helix, 30% strand	Q9NNX6

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

2IT6 · Crystal Structure of DCSIGN-CRD with man2 · the same entry in another collection · chain A against A, TM-score 1.00
Q9NNX6 · AlphaFold monomer V2.0 prediction for CD209 antigen (Q9NNX6) · a predicted model of the same protein · chain A against A, TM-score 0.99

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9NNX6
Elsewhere: RCSB PDB 2IT6 · PDBe 2IT6 · UniProt Q9NNX6

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