UniProt Q9NNX6
DC-SIGN, CRD domain (Q9NNX6)
DC-SIGN, CRD domain (UniProt Q9NNX6): 17 experimental structures and 1 predicted model on GenesisL1, 9 ligands bound, 10 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9NNX6
- Protein
- DC-SIGN, CRD domain
- Experimental structures
- 17
- Predicted models
- 1
- Ligands
- 9
- Pockets
- 10 · 2 records with a druggable one
Structures
18 records of Q9NNX6 in the MolNFT archive: 17 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2IT5 | Crystal Structure of DCSIGN-CRD with man6 | x-ray diffraction | A | — | — |
| 2IT5 | Crystal structure of dcsign-crd with MAN6 | x-ray diffraction | A | — | — |
| 2IT6 | Crystal Structure of DCSIGN-CRD with man2 | x-ray diffraction | A | — | — |
| 2IT6 | Crystal structure of dcsign-crd with MAN2 | x-ray diffraction | A | — | — |
| 2XR5 | Crystal structure of the complex of the carbohydrate recognition domain of human DC-SIGN with… | x-ray diffraction | A | — | — |
| 2XR5 | Crystal structure of the complex of the carbohydrate recognition domain of human dc-sign with… | x-ray diffraction | A | — | — |
| 2XR6 | Crystal structure of the complex of the carbohydrate recognition domain of human DC-SIGN with… | x-ray diffraction | A | — | — |
| 2XR6 | Crystal structure of the complex of the carbohydrate recognition domain of human dc-sign with… | x-ray diffraction | A | — | — |
| 6GHV | Structure of a DC-SIGN CRD in complex with high affinity glycomimetic. | x-ray diffraction | A, B, C, D, E, F | EZ8, CA, CL | 6 (best 0.78) |
| 6GHV | Structure of a dc-sign crd in complex with high affinity glycomimetic. | x-ray diffraction | A, B, C, D, E, F | EZ8, CA, CL | — |
| 7NL6 | Crystal Structure of DC-SIGN in complex with a triazole-based glycomimetic ligand | x-ray diffraction | A | CA, UH8, NO3 | — |
| 7NL6 | Crystal structure of dc-sign in complex with a triazole-based glycomimetic ligand | x-ray diffraction | A | CA, UH8, NO3 | — |
| 7NL7 | Crystal Structure of DC-SIGN in complex with a triazole-based glycomimetic ligand | x-ray diffraction | A | CA, UH5 | — |
| 7NL7 | Crystal structure of dc-sign in complex with a triazole-based glycomimetic ligand | x-ray diffraction | A | CA, UH5 | — |
| 9EMQ | Crystal Structure of DC-SIGN in complex with AL86 | x-ray diffraction | A | CA, A1H5Z | — |
| 9EMR | Crystal Structure of DC-SIGN in complex with AL90 | x-ray diffraction | A, B, C | CA, A1H5Y | 4 (best 0.83) |
| 9EMS | Crystal Structure of DC-SIGN in complex with JXH1902 | x-ray diffraction | A | CA, A1H5X | — |
| Q9NNX6 | AlphaFold monomer V2.0 prediction for CD209 antigen (Q9NNX6) | predicted | A | — | — |
Ligands
- CA · Calcium ion · in 9 records
- CL · Chloride ion · in 2 records
- EZ8 · [1-[(2~{S},3~{S},4~{R},5~{S},6~{R})-2-[(1~{S},2~{S}, 4~{S},5~{S})-2-(2-chloroethyloxy)-4,5-bis[[4-(hydroxymethyl)phenyl]methylcarbamoyl]cyclohexyl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-1,2,3-triazol-4-yl]methylazanium · in 2 records
- NO3 · Nitrate ion · in 2 records
- UH5 · 3-Aminopropyl 2-deoxy-2-(4-phenyl-1,2,3-triazol-1-yl)-alpha-D-mannopyranoside · in 2 records
- UH8 · Methyl 2-deoxy-2-(4-(pyridine-3-yl))-1,2,3-triazol-1-yl)-alpha-D-mannopyranoside · in 2 records
- A1H5X · (2~{R},3~{S},4~{R},5~{S},6~{S})-6-[(2~{S})-3-azanyl-2-oxidanyl-propoxy]-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol · in 1 record
- A1H5Y · (2~{R},3~{S},4~{R},5~{S},6~{S})-6-[(2~{S})-2,3-bis(oxidanyl)propoxy]-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol · in 1 record
- A1H5Z · (2~{R},3~{S},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)-6-[[(3~{S})-piperidin-3-yl]methoxy]oxane-3,4-diol · in 1 record
Experiment against prediction
- 7NL7 chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.39 Å
- 7NL7 chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.39 Å
- 9EMR chain C against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.40 Å
- 7NL6 chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.40 Å
- 7NL6 chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.40 Å
- 9EMQ chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.41 Å
- 9EMR chain B against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.41 Å
- 9EMR chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.42 Å
- 2IT6 chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.51 Å
- 2IT6 chain A against the predicted model Q9NNX6: TM-score 0.99, RMSD 0.51 Å
Elsewhere
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