Research workbench
Structure of camp-dependent protein kinase complexed with isoquinoline-5-sulfonic acid (2-(2-(4-CHLOROBENZYLOXY)ETHYLAMINO) ETHYL)AMIDE
Analyse Structure of camp-dependent protein kinase complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2C1A
- Type
- protein
- Length
- 357 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Camp-dependent protein kinase; Camp-dependent protein kinase inhibitor
- EC
- 2.7.1.37
- UniProt
- P00517, P61925
- Ligands
- I5S
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Camp-dependent protein kinase (EC 2.7.1.37) | protein | 337 | 36% helix, 16% strand | P00517 |
| I | Camp-dependent protein kinase inhibitor | protein | 20 | 35% helix, 5% strand | P61925 |
Ligands and binding sites
- I5S · Isoquinoline-5-sulfonic acid (2-(2-(4-chlorobenzyloxy)ethylamino)ethyl)amide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 420 | 0.79 | 0.87 | 41 | I5S |
| 2 | 78 | 0.45 | 0.80 | 12 | empty |
| 3 | 104 | 0.43 | 0.78 | 18 | empty |
| 4 | 69 | 0.31 | 0.74 | 13 | empty |
| 5 | 81 | 0.30 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–I · 1015 Ų buried · 25 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (phosphorylation).
Compared structures
- 2C1A · Structure of cAMP-dependent protein kinase complexed with Isoquinoline-5-sulfonic acid… · the same entry in another collection · chain A against A, TM-score 1.00
- P61925 · AlphaFold monomer V2.0 prediction for camp-dependent protein kinase inhibitor alpha… · a predicted model of the same protein · chain I against A, TM-score 0.40
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00517
- Every structure of UniProt P61925
- Elsewhere: RCSB PDB 2C1A · PDBe 2C1A · UniProt P00517 · UniProt P61925
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