Research workbench
1.0A structure of chromobacterium violaceum lectin in complex with alpha-methyl-mannoside
Analyse 1.0A structure of chromobacterium violaceum lectin in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2BV4
- Type
- protein
- Length
- 226 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin cv-iil
- UniProt
- Q7NX84
- Ligands
- MMA, CA
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 72% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lectin cv-iil | protein | 113 | 0% helix, 72% strand | Q7NX84 |
Ligands and binding sites
- MMA · methyl alpha-D-mannopyranoside · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1313 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 2BV4 · 1.0A Structure of Chromobacterium Violaceum Lectin in Complex with alpha-methyl-mannoside · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7NX84
- Elsewhere: RCSB PDB 2BV4 · PDBe 2BV4 · UniProt Q7NX84
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