Research workbench
Crystal structure of the complex between the C-terminal domains of human xpf and ERCC1
Analyse Crystal structure of the complex between the C-terminal domains of human xpf… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2A1J
- Type
- protein
- Length
- 141 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair endonuclease xpf; DNA excision repair protein ercc-1
- EC
- 3.1.-.-
- UniProt
- Q92889, P07992
- Ligands
- HG
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair endonuclease xpf (EC 3.1.-.-) | protein | 62 | 63% helix, 0% strand | Q92889 |
| B | DNA excision repair protein ercc-1 | protein | 79 | 65% helix, 0% strand | P07992 |
Ligands and binding sites
- HG · Mercury (II) ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1149 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2A1J · Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q92889 · AlphaFold monomer V2.0 prediction for DNA repair endonuclease xpf (Q92889) · a predicted model of the same protein · chain A against A, TM-score 0.90
- P07992 · AlphaFold monomer V2.0 prediction for DNA excision repair protein ercc-1 (P07992) · a predicted model of the same protein · chain B against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92889
- Every structure of UniProt P07992
- Elsewhere: RCSB PDB 2A1J · PDBe 2A1J · UniProt Q92889 · UniProt P07992
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