GL1X · GenesisL1 explorer

Research workbench

Crystal structure of the complex between the C-terminal domains of human xpf and ERCC1

Analyse Crystal structure of the complex between the C-terminal domains of human xpf… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2A1J
Type
protein
Length
141 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA repair endonuclease xpf; DNA excision repair protein ercc-1
EC
3.1.-.-
UniProt
Q92889, P07992
Ligands
HG

Structure

x-ray diffraction · 2 distinct chains · 64% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA repair endonuclease xpf (EC 3.1.-.-)protein6263% helix, 0% strandQ92889
BDNA excision repair protein ercc-1protein7965% helix, 0% strandP07992

Ligands and binding sites

  • HG · Mercury (II) ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 1149 Ų buried · 7 hydrogen bonds · protein-protein

Compared structures

  • 2A1J · Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q92889 · AlphaFold monomer V2.0 prediction for DNA repair endonuclease xpf (Q92889) · a predicted model of the same protein · chain A against A, TM-score 0.90
  • P07992 · AlphaFold monomer V2.0 prediction for DNA excision repair protein ercc-1 (P07992) · a predicted model of the same protein · chain B against A, TM-score 0.80

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.