Research workbench

Intermediate structure of L-2-haloacid dehalogenase with monochloroacetate

Analyse Intermediate structure of L-2-haloacid dehalogenase with monochloroacetate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZRN
Type: protein
Length: 220 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: L-2-haloacid dehalogenase
EC: 3.8.1.2
UniProt: Q53464
Pockets: 2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	L-2-haloacid dehalogenase (EC 3.8.1.2)	protein	220	53% helix, 14% strand	Q53464

Ligands and binding sites

ACY · Acetic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.68	0.93	17	ACY
2	188	0.46	0.75	29	empty

Modifications

Observed in the structure: 1 covalent (additive adduct).

Compared structures

1ZRN · Intermediate structure of L-2-haloacid dehalogenase with monochloroacetate · the same entry in another collection · chain A against A, TM-score 1.00
Q53464 · AlphaFold monomer V2.0 prediction for (S)-2-haloacid dehalogenase (Q53464) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53464
Elsewhere: RCSB PDB 1ZRN · PDBe 1ZRN · UniProt Q53464

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.