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Structural characterization of the mit domain from human VPS4B

Analyse Structural characterization of the mit domain from human VPS4B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WR0
Type: protein
Length: 81 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SKD1 protein
UniProt: O75351
Pockets: 1 · best druggability 0.34

Structure

solution nmr · 1 distinct chain · 70% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SKD1 protein	protein	81	70% helix, 0% strand	O75351

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.34	0.77	16	empty

Compared structures

1WR0 · Structural characterization of the MIT domain from human Vps4b · the same entry in another collection · chain A against A, TM-score 1.00
O75351 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 4B… · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O75351
Elsewhere: RCSB PDB 1WR0 · PDBe 1WR0 · UniProt O75351

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