Research workbench
Structure of the arabidopsis thaliana SOS3 complexed with CALCIUM(II) and MANGANESE(II) ions
Analyse Structure of the arabidopsis thaliana SOS3 complexed with CALCIUM(II) and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1V1F
- Type
- protein
- Length
- 188 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcineurin B-like protein 4
- UniProt
- O81223
- Ligands
- CA, MN, IOD
- Pockets
- 6 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcineurin B-like protein 4 | protein | 188 | 54% helix, 2% strand | O81223 |
Ligands and binding sites
- CA · Calcium ion · metal · 3 copies · chains A
- MN · Manganese (II) ion · metal · chains A
- IOD · Iodide ion · ion · 7 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 233 | 0.66 | 0.83 | 25 | empty |
| 2 | 114 | 0.51 | 0.81 | 22 | empty |
| 3 | 103 | 0.42 | 0.77 | 22 | IOD, MPD |
| 4 | 123 | 0.40 | 0.75 | 18 | IOD, MPD |
| 5 | 57 | 0.30 | 0.75 | 18 | empty |
Compared structures
- 1V1F · Structure of the Arabidopsis thaliana SOS3 complexed with Calcium(II) and Manganese(II)… · the same entry in another collection · chain A against A, TM-score 1.00
- O81223 · AlphaFold monomer V2.0 prediction for calcineurin B-like protein 4 (O81223) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O81223
- Elsewhere: RCSB PDB 1V1F · PDBe 1V1F · UniProt O81223
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