Research workbench
Crystal structure of ylgv mutant of dimerisation domain of nf-kb P50 transcription factor
Analyse Crystal structure of ylgv mutant of dimerisation domain of nf-kb P50… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1U41
- Type
- protein
- Length
- 404 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nuclear factor nf-kappa-B P105 subunit
- UniProt
- P25799
Structure
x-ray diffraction · 4 distinct chains · 3% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear factor nf-kappa-B P105 subunit | protein | 103 | 3% helix, 45% strand | P25799 |
| B | Nuclear factor nf-kappa-B P105 subunit | protein | 101 | 3% helix, 47% strand | P25799 |
| C | Nuclear factor nf-kappa-B P105 subunit | protein | 97 | 3% helix, 46% strand | P25799 |
| D | Nuclear factor nf-kappa-B P105 subunit | protein | 103 | 3% helix, 47% strand | P25799 |
Interfaces
2 interfaces between chains.
- C–D · 832 Ų buried · 18 hydrogen bonds · protein-protein
- A–B · 774 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 1U41 · Crystal structure of YLGV mutant of dimerisation domain of NF-kB p50 transcription factor · the same entry in another collection · chain D against D, TM-score 1.00
- P25799 · AlphaFold monomer V2.0 prediction for nuclear factor nf-kappa-B P105 subunit (P25799) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25799
- Elsewhere: RCSB PDB 1U41 · PDBe 1U41 · UniProt P25799
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