Research workbench
A dual inhibitor of the leukocyte proteases cathepsin G and chymase with therapeutic efficacy in animals models of inflammation
Analyse A dual inhibitor of the leukocyte proteases cathepsin G and chymase with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1T32
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cathepsin G
- EC
- 3.4.21.20
- UniProt
- P08311
- Ligands
- OHH, SO4
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cathepsin G (EC 3.4.21.20) | protein | 224 | 9% helix, 37% strand | P08311 |
Ligands and binding sites
- OHH · 2-[3-({methyl[1-(2-naphthoyl)piperidin-4-yl]amino}carbonyl)-2-naphthyl]-1-(1-naphthyl)-2-oxoethylphosphonic acid · ligand · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.45 | 0.77 | 32 | OHH |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1T32 · A Dual Inhibitor of the Leukocyte Proteases Cathepsin G and Chymase with Therapeutic… · the same entry in another collection · chain A against A, TM-score 1.00
- P08311 · AlphaFold monomer V2.0 prediction for cathepsin G (P08311) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08311
- Elsewhere: RCSB PDB 1T32 · PDBe 1T32 · UniProt P08311
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