Research workbench
Bovine trypsin 7-[[2-[[1-(1-IMINOETHYL)PIPERIDIN-4-YL]OXY]-9H- carbozol-9-yl] METHYL]NAPHTHALENE-2-carboximidamide (zk-806450) complex
Analyse Bovine trypsin 7-[[2-[[1-(1-IMINOETHYL)PIPERIDIN-4-YL]OXY]-9H- carbozol-9-yl]… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QB9
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (trypsin)
- EC
- 3.4.21.4
- UniProt
- P00760
- Ligands
- 806, CA, K
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (trypsin) (EC 3.4.21.4) | protein | 223 | 10% helix, 37% strand | P00760 |
Ligands and binding sites
- 806 · 7-[[2-[[1-(1-iminoethyl)piperidin-4-yl]oxy]-9H-carbozol-9-yl]methyl]naphthalene-2-carboximidamid · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- K · Potassium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 1QB9 · Bovine trypsin 7-[[2-[[1-(1-IMINOETHYL)PIPERIDIN-4-YL]OXY]-9H-carbozol-9-yl]… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00760
- Elsewhere: RCSB PDB 1QB9 · PDBe 1QB9 · UniProt P00760
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