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Crystal structure of stenoloma chusanum chalcone synthase 1 (SCCHS1) complex with CoA and eriodictyol

Analyse Crystal structure of stenoloma chusanum chalcone synthase 1 (SCCHS1) complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7YJB
Type: protein
Length: 389 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chalcone synthase 1 (SCCHS1)
Ligands: ERD, COA
Pockets: 1 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chalcone synthase 1 (SCCHS1)	protein	389	41% helix, 23% strand	—

Ligands and binding sites

ERD · (2S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-2,3-dihydro-4H-chromen-4-one · ligand · chains A
COA · Coenzyme A · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	408	0.77	0.86	62	ERD, COA

Compared structures

7YJB · Crystal structure of Stenoloma chusanum chalcone synthase 1 (ScCHS1) complex with CoA and… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7YJB · PDBe 7YJB

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