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Crystal structure of arabidopsis thaliana acetohydroxyacid synthase P197T mutant in complex with bispyribac-sodium

Analyse Crystal structure of arabidopsis thaliana acetohydroxyacid synthase P197T… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7TZZ
Type
protein
Length
582 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Acetolactate synthase, chloroplastic
EC
2.2.1.6
UniProt
P17597
Ligands
FAD, 6QL, AUJ, MG, PO4, SO4
Pockets
4 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAcetolactate synthase, chloroplastic (EC 2.2.1.6)protein58241% helix, 17% strandP17597

Ligands and binding sites

  • FAD · Flavin-adenine dinucleotide · ligand · chains A
  • 6QL · 2,6-bis[(4,6-dimethoxypyrimidin-2-yl)oxy]benzoic acid · ligand · chains A
  • AUJ · 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[(1~{S})-1-(dioxidanyl)-1-oxidanyl-ethyl]-4-methyl-1, 3-thiazol-5-yl]ethyl phosphono hydrogen phosphate · ligand · chains A
  • MG · Magnesium ion · metal · 5 copies · chains A
  • PO4 · Phosphate ion · ion · chains A
  • SO4 · Sulfate ion · ion · chains A
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
16800.800.8592MG, FAD, AUJ
2900.420.7820empty
3780.330.7415empty
4690.290.7317empty

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

  • 7TZZ · Crystal structure of arabidopsis thaliana acetohydroxyacid synthase P197T mutant in… · the same entry in another collection · chain A against A, TM-score 1.00
  • P17597 · AlphaFold monomer V2.0 prediction for acetolactate synthase, chloroplastic (P17597) · a predicted model of the same protein · chain A against A, TM-score 1.00

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