Research workbench
Chicken grifin bound to blood group tetrasaccharide B (type 1)
Analyse Chicken grifin bound to blood group tetrasaccharide B (type 1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7P8H
- Type
- protein
- Length
- 276 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galectin
- UniProt
- F1NZ18
- Ligands
- NAG, GAL, FUC, GLA
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Galectin | protein | 138 | 2% helix, 59% strand | F1NZ18 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains C, A
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains C, A
- FUC · alpha-L-fucopyranose · sugar · 2 copies
- GLA · alpha-D-galactopyranose · sugar · 2 copies · chains C, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–C · 827 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 7P8H · chicken GRIFIN bound to blood group tetrasaccharide B (type 1) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F1NZ18
- Elsewhere: RCSB PDB 7P8H · PDBe 7P8H · UniProt F1NZ18
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