Research workbench
Ternary complex of 14-3-3 sigma, P27PT198 phosphopeptide, and WQ147
Analyse Ternary complex of 14-3-3 sigma, P27PT198 phosphopeptide, and WQ147 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ORS
- Type
- protein
- Length
- 238 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 14-3-3 protein sigma; Cyclin-dependent kinase inhibitor 1B
- UniProt
- P31947, P46527
- Ligands
- 0I2, MG, CL
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 14-3-3 protein sigma | protein | 233 | 81% helix, 0% strand | P31947 |
| P | Cyclin-dependent kinase inhibitor 1B | protein | 5 | 0% helix, 0% strand | P46527 |
Ligands and binding sites
- 0I2 · (4~{S})-~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl) methyl]oxepane-4-carboxamide · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.52 | 0.79 | 19 | empty |
Interfaces
1 interface between chains.
- A–P · 449 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation, phosphorylation).
Compared structures
- 7ORS · Ternary complex of 14-3-3 sigma, p27pT198 phosphopeptide, and WQ147 · the same entry in another collection · chain A against A, TM-score 1.00
- P31947 · AlphaFold monomer V2.0 prediction for 14-3-3 protein sigma (P31947) · a predicted model of the same protein · chain A against A, TM-score 0.95
- P46527 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase inhibitor 1B (P46527) · a predicted model of the same protein · chain P against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31947
- Every structure of UniProt P46527
- Elsewhere: RCSB PDB 7ORS · PDBe 7ORS · UniProt P31947 · UniProt P46527
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