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Ternary complex of 14-3-3 sigma, P27PT198 phosphopeptide, and WQ178

Analyse Ternary complex of 14-3-3 sigma, P27PT198 phosphopeptide, and WQ178 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7ORH
Type
protein
Length
234 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
14-3-3 protein sigma; Cyclin-dependent kinase inhibitor 1B
UniProt
P31947, P46527
Ligands
0B7, MG, CL
Pockets
1 · best druggability 0.54

Structure

x-ray diffraction · 2 distinct chains · 80% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A14-3-3 protein sigmaprotein22982% helix, 0% strandP31947
PCyclin-dependent kinase inhibitor 1Bprotein50% helix, 0% strandP46527

Ligands and binding sites

  • 0B7 · ~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl)methyl]-1~{H}-indole-6-carboxamide · ligand · 2 copies · chains A
  • MG · Magnesium ion · metal · 2 copies · chains A
  • CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11670.540.7920empty

Interfaces

1 interface between chains.

  • A–P · 455 Ų buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (oxidation, phosphorylation).

Compared structures

  • 7ORH · Ternary complex of 14-3-3 sigma, p27pT198 phosphopeptide, and WQ178 · the same entry in another collection · chain A against A, TM-score 1.00
  • P31947 · AlphaFold monomer V2.0 prediction for 14-3-3 protein sigma (P31947) · a predicted model of the same protein · chain A against A, TM-score 0.95
  • P46527 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase inhibitor 1B (P46527) · a predicted model of the same protein · chain P against A, TM-score 0.77

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