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Ternary complex of 14-3-3 sigma, estrogen receptor alfa phosphopeptide, and WQ162

Analyse Ternary complex of 14-3-3 sigma, estrogen receptor alfa phosphopeptide, and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7OQ7
Type
protein
Length
234 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
14-3-3 protein sigma; Estrogen receptor
UniProt
P31947, P03372
Ligands
09W, MG, CL
Pockets
2 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 81% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A14-3-3 protein sigmaprotein22983% helix, 0% strandP31947
BEstrogen receptorprotein50% helix, 0% strandP03372

Ligands and binding sites

  • 09W · ~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl)methyl]-2,3-dihydro-1-benzofuran-7-carboxamide · ligand · 2 copies · chains A, B
  • MG · Magnesium ion · metal · 2 copies · chains A
  • CL · Chloride ion · ion · chains A
  • BME · Beta-mercaptoethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11110.510.8120empty
2850.380.7720empty

Interfaces

1 interface between chains.

  • A–B · 459 Ų buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 covalent, 1 modified (additive adduct, phosphorylation).

Compared structures

  • 7OQ7 · Ternary complex of 14-3-3 sigma, Estrogen Receptor alfa phosphopeptide, and WQ162 · the same entry in another collection · chain A against A, TM-score 1.00
  • P31947 · AlphaFold monomer V2.0 prediction for 14-3-3 protein sigma (P31947) · a predicted model of the same protein · chain A against A, TM-score 0.95
  • P03372 · AlphaFold monomer V2.0 prediction for estrogen receptor (P03372) · a predicted model of the same protein · chain B against A, TM-score 0.80

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