Research workbench
Leucine aminopeptidase a mature enzyme in a complex with leucine
Analyse Leucine aminopeptidase a mature enzyme in a complex with leucine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OEZ
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Leucine aminopeptidase a
- EC
- 3.4.11.-
- UniProt
- Q2U1F3
- Ligands
- LEU, NAG, ZN, SO4, CL
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leucine aminopeptidase a (EC 3.4.11.-) | protein | 301 | 42% helix, 15% strand | Q2U1F3 |
Ligands and binding sites
- LEU · Leucine · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.45 | 0.82 | 18 | LEU |
Modifications
Observed in the structure: 1 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 7OEZ · Leucine Aminopeptidase A mature enzyme in a complex with leucine · the same entry in another collection · chain A against A, TM-score 1.00
- Q2U1F3 · AlphaFold monomer V2.0 prediction for leucine aminopeptidase a (Q2U1F3) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2U1F3
- Elsewhere: RCSB PDB 7OEZ · PDBe 7OEZ · UniProt Q2U1F3
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