Research workbench
Crystal structure of dc-sign in complex with a triazole-based glycomimetic ligand
Analyse Crystal structure of dc-sign in complex with a triazole-based glycomimetic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NL6
- Type
- protein
- Length
- 132 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dc-sign, crd domain
- UniProt
- Q9NNX6
- Ligands
- UH8, CA, NO3
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dc-sign, crd domain | protein | 132 | 22% helix, 30% strand | Q9NNX6 |
Ligands and binding sites
- UH8 · Methyl 2-deoxy-2-(4-(pyridine-3-yl))-1,2,3-triazol-1-yl)-alpha-D-mannopyranoside · ligand · chains A
- CA · Calcium ion · metal · 3 copies · chains A
- NO3 · Nitrate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 7NL6 · Crystal Structure of DC-SIGN in complex with a triazole-based glycomimetic ligand · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NNX6 · AlphaFold monomer V2.0 prediction for CD209 antigen (Q9NNX6) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NNX6
- Elsewhere: RCSB PDB 7NL6 · PDBe 7NL6 · UniProt Q9NNX6
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