Research workbench

A. baumannii ribosome-eravacycline complex: 50S

Analyse A. baumannii ribosome-eravacycline complex: 50S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7M4V
Type: protein + RNA
Length: 5,975 residues
Chains: 30
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A062FI44, A0A1J6Y3G0, B7I693, A0A372FJT1, B7IA36, B7IA39, B7IA38, B7IA27, B7IA24, B7IBC3, B7I9B0, N8SHC6, B7IA20, B7IA32, B7IA13, B7IA23, B7IAS9, V5VGC9, B7I6V9, A0A009I821, B7IA37, B7IA28, B7I7B6, B7I6V8, N9N7A0, B7IA31, A0A062FG91, B7I7A4
Ligands: YQM, MG, ZN

Structure

electron microscopy · 30 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
0	—	protein	51	—	A0A062FI44
1	—	protein	44	—	A0A1J6Y3G0
2	—	protein	63	—	B7I693
3	—	protein	38	—	A0A372FJT1
A	—	rna	2732	—	—
B	—	rna	115	—	—
C	—	protein	272	—	B7IA36
D	—	protein	211	—	B7IA39
E	—	protein	200	—	B7IA38
F	—	protein	174	—	B7IA27
G	—	protein	174	—	B7IA24
H	—	protein	60	—	B7IBC3
I	—	protein	142	—	B7I9B0
J	—	protein	122	—	N8SHC6
K	—	protein	144	—	B7IA20
L	—	protein	137	—	B7IA32
M	—	protein	119	—	B7IA13
N	—	protein	114	—	B7IA23
O	—	protein	116	—	B7IAS9
P	—	protein	118	—	V5VGC9
Q	—	protein	103	—	B7I6V9
R	—	protein	109	—	A0A009I821
S	—	protein	91	—	B7IA37
T	—	protein	103	—	B7IA28
U	—	protein	97	—	B7I7B6
V	—	protein	77	—	B7I6V8
W	—	protein	77	—	N9N7A0
X	—	protein	60	—	B7IA31
Y	—	protein	57	—	A0A062FG91
Z	—	protein	55	—	B7I7A4

Ligands and binding sites

YQM · Eravacycline · ligand · 2 copies · chains A
MG · Magnesium ion · metal · 159 copies · chains A, K, D, C, S, M, B
ZN · Zinc ion · metal · chains 3

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7M4V · A. baumannii Ribosome-Eravacycline complex: 50S · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A062FI44
Every structure of UniProt A0A1J6Y3G0
Every structure of UniProt B7I693
Every structure of UniProt A0A372FJT1
Every structure of UniProt B7IA36
Every structure of UniProt B7IA39
Every structure of UniProt B7IA38
Every structure of UniProt B7IA27
Every structure of UniProt B7IA24
Every structure of UniProt B7IBC3
Every structure of UniProt B7I9B0
Every structure of UniProt N8SHC6
Every structure of UniProt B7IA20
Every structure of UniProt B7IA32
Every structure of UniProt B7IA13
Every structure of UniProt B7IA23
Every structure of UniProt B7IAS9
Every structure of UniProt V5VGC9
Every structure of UniProt B7I6V9
Every structure of UniProt A0A009I821
Every structure of UniProt B7IA37
Every structure of UniProt B7IA28
Every structure of UniProt B7I7B6
Every structure of UniProt B7I6V8
Every structure of UniProt N9N7A0
Every structure of UniProt B7IA31
Every structure of UniProt A0A062FG91
Every structure of UniProt B7I7A4
Elsewhere: RCSB PDB 7M4V · PDBe 7M4V · UniProt A0A062FI44 · UniProt A0A1J6Y3G0 · UniProt B7I693 · UniProt A0A372FJT1 · UniProt B7IA36 · UniProt B7IA39 · UniProt B7IA38 · UniProt B7IA27 · UniProt B7IA24 · UniProt B7IBC3 · UniProt B7I9B0 · UniProt N8SHC6 · UniProt B7IA20 · UniProt B7IA32 · UniProt B7IA13 · UniProt B7IA23 · UniProt B7IAS9 · UniProt V5VGC9 · UniProt B7I6V9 · UniProt A0A009I821 · UniProt B7IA37 · UniProt B7IA28 · UniProt B7I7B6 · UniProt B7I6V8 · UniProt N9N7A0 · UniProt B7IA31 · UniProt A0A062FG91 · UniProt B7I7A4

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