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X-ray structure of spop math domain (D140G) in complex with a 53BP1 peptide

Analyse X-ray structure of spop math domain (D140G) in complex with a 53BP1 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7LIN
Type: protein
Length: 147 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Speckle-type poz protein; TP53-binding protein 1 peptide
UniProt: O43791, Q12888
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 11% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Speckle-type poz protein	protein	139	12% helix, 49% strand	O43791
B	TP53-binding protein 1 peptide	protein	8	0% helix, 13% strand	Q12888

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 387 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

7LIN · X-ray structure of SPOP MATH domain (D140G) in complex with a 53BP1 peptide · the same entry in another collection · chain A against A, TM-score 1.00
O43791 · AlphaFold monomer V2.0 prediction for speckle-type poz protein (O43791) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O43791
Every structure of UniProt Q12888
Elsewhere: RCSB PDB 7LIN · PDBe 7LIN · UniProt O43791 · UniProt Q12888

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